Publications

From Genome@Yale

in reverse chronological order; * indicates THK as a corresponding author

2009

• Kerrigan B. Gilbert, Tae Hoon Kim, Rashmi Gupta, E. Peter Greenberg and Martin Schuster. Global position analysis of the Pseudomonas aeruginosa quorum-sensing transcription factor LasR. Molecular Microbiology 73:1072-1085 (2009). pubmed
• Katharine R. Cecchini, A. Raja Banerjee and Tae Hoon Kim*. Toward a genome-wide reconstruction of cis-regulatory networks in the human genome. Seminars in Cell and Developmental Biology (2009). advanced online publication pubmed
• David A. Wacker and Tae Hoon Kim*. From sextant to GPS: twenty-five years of mapping the genome with ChIP. Journal of Cellular Biochemistry 107:6-10 (2009). pubmed

2008

• Tae Hoon Kim: knows his boundaries. Interview by Ruth Williams. The Journal of Cell Biology 183:4-5 (2008). pubmed

2007

• Tae Hoon Kim*, Leah O. Barrera and Bing Ren. ChIP-chip for genome-wide analysis of protein binding in mammalian cells. Current Protocols in Molecular Biology 79 Unit 21.13 (2007). pubmed
• The ENCODE Project Consortium. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816 (2007). pubmed
• Tae Hoon Kim*, Ziedulla K. Abdullaev, Andrew D. Smith, Keith A. Ching, Dmitri I. Loukinov, Roland D. Green, Michael Q. Zhang, Victor V. Lobanenkov and Bing Ren. Analysis of the vertebrate insulator protein CTCF binding sites in the human genome. Cell 128:1231-1245 (2007). pubmed

2006

• Tae Hoon Kim and Bing Ren. All-around view of eukaryotic transcription. Genome Biology 7:323 (2006). pubmed
• Tae Hoon Kim* and Bing Ren. Genome-wide Analysis of Protein-DNA Interactions. Annual Review of Genomics and Human Genetics 7:81-102 (2006). pubmed
• Ping Sun, Hui Xiong, Tae Hoon Kim, Bing Ren, and Zhuohua Zhang. Positive inter-regulation between β-catenin/T cell factor-4 signaling and endothelin-1 signaling potentiates proliferation and survival of Prostate Cancer Cells. Molecular Pharmacology 69:520-31 (2006). pubmed

pre-2006

• Tae Hoon Kim, Leah O. Barrera, Ming Zheng, Chunxu Qu, Michael A. Singer, Todd A. Richmond, Yingnian Wu, Roland D. Green and Bing Ren. A high-resolution map of active promoters in the human genome. Nature 436:876-880 (2005). pubmed/news release
• Tae Hoon Kim, Leah O. Barrera, Chunxu Qu, Sara Van Calcar, Nathan Trinklein, Sarah Hartman, Rosa Luna, Christopher K. Glass, Michael G. Rosenfeld, Richard Myers, and Bing Ren. Direct isolation and identification of promoters in the human genome. Genome Research 15:830-839 (2005). pubmed
• Tae Hoon Kim, Hui Xong, Zhuohua Zhang, and Bing Ren. β-catenin activates the growth factor endothelin-1 in colon cancer cells. Oncogene 24:597-604 (2005). pubmed
• The ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306:636-640 (2004). pubmed
• Tae Hoon Kim. Structure and Function of Enhanceosome. Ph. D. Thesis, Harvard University (2002).
• Bing Ren, Kerlen J. Chee, Tae Hoon Kim, and Tom Maniatis. PRDI-BF1/Blimp-1 repression is mediated by corepressors of the groucho family of proteins. Genes and Development 13:125-137 (1999). pubmed
• Tom Maniatis, James Falvo, Tae Hoon Kim, Tae Kook Kim, Charles H. Lin, Bhavin S. Parekh, and Marc G. Wathelet. Structure and function of the interferon-β enhanceosome. Cold Spring Harbor Symposium on Quantitative Biology 63:609-620 (1998). pubmed
• Tae Kook Kim, Tae Hoon Kim, and Tom Maniatis. Efficient recruitment of TFIIB and CBP-RNA polymerase II holoenzyme by an Interferon-β enhanceosome in vitro. Proceedings of National Academy of Sciences, USA 95:12191-96 (1998). pubmed
• Tae Hoon Kim. Programmed Cell Death in Arabidopsis thaliana. Senior Thesis, Reed College (1994).
• Tae Hoon Kim. Expression of Salt Tolerance Genes in Vibrio costicola. BASE: A Journal of Science and Technology 8:6-10 (1990).